EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code D0VWZ0

Ligand clusters for D0VWZ0: Tubulin alpha chain from Ovis aries

Top 6 (of 10) ligand clusters


Cluster 1. 6 ligand types 19 ligands		Cluster 2. 2 ligand types 40 ligands		Cluster 3. 1 ligand type 2 ligands		Cluster 4. 2 ligand types 9 ligands		Cluster 5. 1 ligand type 1 ligand		Cluster 6. 1 ligand type 1 ligand

Representative protein: 5kx5A

Structures

PDB		Schematic diagram

5kx5A
4x1yA
4x1iA
4x1kA
3ryhA
		more ...

Cluster 1 contains 6 ligand types

Use checkboxes to select ligands to display in RasMol, Jmol, or download as an SDF file.
Selection shortcuts: select all/none invert selection.

Ligand

Description

1. Ligand: LOC × 6

colchicine

N-[(7s)-1,2,3,10-Tetramethoxy-9-Oxo-6,7-Dihydro-5h- Benzo[d]heptalen-7-Yl]ethanamide

PDB codes: 3ut5(A), 4x1i(A), 4x1k(A), 4x1y(A), 4x20(A), 5eyp(A).

2. Ligand: SO4 × 8

Sulfate ion

PDB codes: 3ryc(A), 3ryf(A), 3ryi(A), 3ut5(A), 4eb6(A), 5eyp(A), 6gx7(A), 6h9b(A).

3. Ligand: T13 × 2

2,3,4,5,6-Pentafluoro-N-(3-Fluoro-4-Methoxyphenyl) benzenesulfonamide

PDB codes: 3hke(A),

4. Ligand: E70 × 1

N-{2-[(4-Hydroxyphenyl)amino]pyridin-3-Yl}-4- Methoxybenzenesulfonamide

PDB code: 3hkc(A).

5. Ligand: FWH × 1

9-Methyl-3-[1-(2-Methylquinolin-4-Yl)ethenyl]carbazole

PDB code: 6h9b(A).

6. Ligand: N16 × 1

(3z,5s)-5-Benzyl-3-[1-(Phenylamino) ethylidene]pyrrolidine-2,4-Dione

PDB code: 3hkd(A).

Cluster 2 contains 2 ligand types

Selection shortcuts: select all/none invert selection.

Ligand

Description

_Mg

1. Metal: _MG × 14

PDB codes: 3hkb(A), 3hkc(A), 3hkd(A), 3hke(A), 3n2g(A), 3n2k(A), 4f61(A), 4x1i(A), 4x1k(A), 4x1y(A), 4x20(A), 5kx5(A), 6gvm(A), 6gx7(A).

2. Ligand: GTP × 26

Guanosine-5'-Triphosphate

PDB codes: 3hkb(A), 3hkc(A), 3hkd(A), 3hke(A), 3n2g(A), 3n2k(A), 3ryc(A), 3ryf(A), 3ryh(A), 3ryi(A), 3ut5(A), 4drx(A), 4eb6(A), 4f61(A), 4f6r(A), 4hna(A), 4x1i(A), 4x1k(A), 4x1y(A), 4x20(A), 5eyp(A), 5kx5(A), 6gvm(A), 6gvn(A), 6gx7(A), 6h9b(A).