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Ligand clusters for UniProt code B1Q236

Ligand clusters for B1Q236: Protein SYG-1, isoform b OS=Caenorhabditis elegans GN=syg-1 PE=1 SV=1

6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 4ofyA  
JSmol
 

Structures

PDB   Schematic diagram
4ofyA    
4of3A    
4of6A    
4of7A    
4of6B    

 

 Cluster 1 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG-FUC × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 4of6(B).


 
2. Ligand: NAG-FUC-NAG × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 4of6(A).


 
3. Ligand: NAG-NAG × 1
NAG=N-Acetyl-D-Glucosamine.
PDB code: 4ofy(A).


 
4. Ligand: NAG-NAG-FUC × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 4of3(A).

 

 Cluster 2 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG-NAG-FUC-FUC × 1
NAG=N-Acetyl-D-Glucosamine, FUC=Alpha-L-Fucose.
PDB code: 4of3(A).

 

 Cluster 3 contains 1 ligand type

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Ligand Description


 
1. Ligand: NAG-NAG-BMA × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB code: 4of3(A).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: EDO × 1
1,2-Ethanediol
PDB code: 4of6(B).


 
2. Ligand: SO4 × 1
Sulfate ion
PDB code: 4of7(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: SO4 × 1
Sulfate ion
PDB code: 4of7(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: EDO × 2
1,2-Ethanediol
PDB codes: 4of6(A),

 

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