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EBI
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Structure Databases
PDBsum
Ligand clusters for UniProt code B1Q236
Ligand clusters for B1Q236: Protein SYG-1, isoform b OS=Caenorhabditis elegans GN=syg-1 PE=1 SV=1
6 ligand clusters
Cluster 1.
4 ligand types
4 ligands
Cluster 2.
1 ligand type
1 ligand
Cluster 3.
1 ligand type
1 ligand
Cluster 4.
2 ligand types
2 ligands
Cluster 5.
1 ligand type
1 ligand
Cluster 6.
1 ligand type
2 ligands
Representative protein: 4ofyA
Structures
PDB
Schematic diagram
4ofy
A
4of3
A
4of6
A
4of7
A
4of6
B
Cluster 1 contains 4 ligand types
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Ligand
Description
1. Ligand:
NAG-FUC × 1
NAG
=N-Acetyl-D-Glucosamine,
FUC
=Alpha-L-Fucose.
PDB code:
4of6
(B).
2. Ligand:
NAG-FUC-NAG × 1
NAG
=N-Acetyl-D-Glucosamine,
FUC
=Alpha-L-Fucose.
PDB code:
4of6
(A).
3. Ligand:
NAG-NAG × 1
NAG
=N-Acetyl-D-Glucosamine.
PDB code:
4ofy
(A).
4. Ligand:
NAG-NAG-FUC × 1
NAG
=N-Acetyl-D-Glucosamine,
FUC
=Alpha-L-Fucose.
PDB code:
4of3
(A).
Cluster 2 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG-NAG-FUC-FUC × 1
NAG
=N-Acetyl-D-Glucosamine,
FUC
=Alpha-L-Fucose.
PDB code:
4of3
(A).
Cluster 3 contains 1 ligand type
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Ligand
Description
1. Ligand:
NAG-NAG-BMA × 1
NAG
=N-Acetyl-D-Glucosamine,
BMA
=Beta-D-Mannose.
PDB code:
4of3
(A).
Cluster 4 contains 2 ligand types
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Ligand
Description
1. Ligand:
EDO × 1
1,2-Ethanediol
PDB code:
4of6
(B).
2. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4of7
(A).
Cluster 5 contains 1 ligand type
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Ligand
Description
1. Ligand:
SO4 × 1
Sulfate ion
PDB code:
4of7
(A).
Cluster 6 contains 1 ligand type
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Ligand
Description
1. Ligand:
EDO × 2
1,2-Ethanediol
PDB codes:
4of6
(A),