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Ligand clusters for UniProt code A2RJT9

Ligand clusters for A2RJT9: Dihydroorotate dehydrogenase A (fumarate) OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=pyrDA PE=1 SV=1

6 ligand clusters
Cluster 1.
5 ligand types
21 ligands
Cluster 2.
2 ligand types
5 ligands
Cluster 3.
2 ligand types
5 ligands
Cluster 4.
1 ligand type
6 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
7 ligands
Representative protein: 1dorA  
JSmol
 

Structures

PDB   Schematic diagram
1dorA    
1ovdA    
1jrcA    
1jqvA    
1jubA    
 more ...

 

 Cluster 1 contains 5 ligand types

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Ligand Description


 
1. Ligand: FMN × 1
Flavin mononucleotide
PDB code: 2bx7(A).


 
2. Ligand: ACT × 2
acetic acid
Acetate ion
PDB codes: 2bsl(A), 2bx7(A).


 
3. Ligand: FMN × 10
Flavin mononucleotide
PDB codes: 1dor(A), 1jqv(A), 1jqx(A), 1jrb(A), 1jrc(A), 1jub(A), 1jue(A), 1ovd(A), 2bsl(A), 2dor(A).


 
4. Ligand: ORO × 6
Orotic acid
PDB codes: 1jqv(A), 1jqx(A), 1jrb(A), 1jrc(A), 1ovd(A), 2dor(A).


 
5. Ligand: ACY × 2
Acetic acid
PDB codes: 1jqv(A), 1jue(A).

 

 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 4
Glycerol
PDB codes: 1jqx(A), 1jub(A), 1jue(A), 1ovd(A).


 
2. Ligand: ACY × 1
Acetic acid
PDB code: 1jqv(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 4
Glycerol
PDB codes: 1jqx(A), 1jub(A), 1jue(A), 1ovd(A).


 
2. Ligand: ACY × 1
Acetic acid
PDB code: 1jqv(A).

 

 Cluster 4 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 6
Glycerol
PDB codes: 2bx7(A), 1jqx(A), 1jub(A), 1jue(A), 1ovd(A), 2bsl(A).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: GOL × 3
Glycerol
PDB codes: 1jub(A), 1jue(A), 1ovd(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description

_Mg
 
1. Metal: _MG × 7
PDB codes: 1jqv(A), 1jqx(A), 1jub(A), 1jue(A), 1ovd(A), 2bsl(A), 2bx7(A).

 

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