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PDBsum entry 6ozc
Go to PDB code:
Ligand/metal interactions
PDB id
6ozc
9 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG-BMA-MAN-
MAN-MAN
×3
NAG 1(S) to MAN 6(S)
NAG-NAG-BMA-MAN-
MAN
×6
NAG 1(T) to MAN 5(T)
NAG 1(V) to MAN 5(V)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN
×6
NAG 1(U) to MAN 9(U)
NAG 1(Y) to MAN 9(Y)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN
×3
NAG 1(W) to MAN 8(W)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
×3
NAG 1(X) to MAN 7(X)
NAG 1(h) to MAN 7(h)
NAG 1(r) to MAN 7(r)
NAG-NAG
×9
NAG 1(Z) to NAG 2(Z)
NAG 1(a) to NAG 2(a)
NAG 1(b) to NAG 2(b)
NAG
×21
NAG 626(A)
NAG 653(A)
NAG 656(A)
NAG 659(A)
NAG 701(B)
NAG 702(B)
NAG 703(B)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(Z)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(Z)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(Z) to NAG 2(Z)
also representing 2 other equivalent ligands:
NAG 1(j) to NAG 2(j)
NAG 1(t) to NAG 2(t)
