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PDBsum entry 3nt1
Go to PDB code:
Ligand/metal interactions
PDB id
3nt1
2 instances of ligand highlighted
HEM
Ligands
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG
×4
NAG 661(A)
NAG 681(A)
BOG
×4
BOG 3(A)
BOG 6(A)
BOG 620(A)
NPS
×2
NPS 5(A)
HEM
×2
HEM 619(A)
Metals
_CL
×2
CL 1(A)
Ligand
HEM
-
Protoporphyrin IX containing fe
[Heme]
Formula:
C
34
H
32
FeN
4
O
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
HEM 619(A)
43
43
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
HEM 619(A)
O2D: O1D
|
O1D: O2D
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product prostaglandin H2 with similarity 51.11%
LIGPLOT
of interactions involving ligand HEM
List of
interactions
HEM 619(A)
(also representing equivalent ligand HEM 619(B) )
_CL
×2
