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PDBsum entry 1ty5
Go to PDB code:
Ligand/metal interactions
PDB id
1ty5
Ligand highlighted
NAG-NAG-BMA-MAN-
MAN-BMA-BMA
Ligands
NAG
×2
NAG 1001(A)
NAG 1003(B)
NDG
NDG 1002(A)
GOL
×4
GOL 1201(A)
GOL 1202(A)
GOL 1204(B)
GOL 1203(L)
NAG-NAG-MAN-BMA-
BMA
NAG 1004(B) to BMA 1008(B)
NAG-NAG-BMA-MAN-
MAN-BMA-BMA
NAG 1009(B) to BMA 1015(B)
AGG
AGG 9301(B)
Metals
_CA
×6
CA 1404(A)
CA 1405(A)
CA 1406(A)
CA 1407(A)
CA 1402(B)
CA 1403(B)
_MG
MG 1401(B)
Ligand
NAG-NAG-BMA-MAN-MAN-BMA-BMA
NAG
-
N-Acetyl-D-Glucosamine [Nag]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannose
Formula:
C
6
H
12
O
6
BMA
-
Beta-D-Mannose
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1009(B)
15
15
1
1
Complete
Chiral checks - OK
NAG 1010(B)
15
15
1
0
Complete
Chiral checks - OK
BMA 1011(B)
12
12
1
0
Complete
Chiral checks - OK
MAN 1012(B)
12
12
1
0
Complete
Chiral checks - OK
MAN 1013(B)
12
12
1
0
Complete
Chiral checks - OK
BMA 1014(B)
12
12
1
0
Complete
Chiral checks - OK
BMA 1015(B)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Obsolete entries are not available in the
Validator
DB
.
Validation carried out using
MotiveValidator
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-MAN-BMA-BMA
List of
interactions
NAG 1009(B) to BMA 1015(B)
_CA
×6
_MG
