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PDBsum entry 5kn0
Go to PDB code:
Ligand/metal interactions
PDB id
5kn0
10 instances of ligand highlighted
MPD
Ligands
NAG-NAG
NAG 1(E) to NAG 2(E)
NAG-NAG-BMA
NAG 1(F) to BMA 3(F)
NAG
×2
NAG 501(A)
MPD
×10
MPD 507(A)
MPD 508(A)
MPD 509(B)
MPD 507(C)
MPD 509(C)
Metals
_CA
×19
CA 502(A)
CA 503(A)
CA 504(A)
CA 505(A)
CA 506(A)
Ligand
MPD
-
(4s)-2-Methyl-2,4-Pentanediol
Formula:
C
6
H
14
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MPD 507(A)
8
8
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MPD
List of
interactions
MPD 507(A)
also representing 4 other equivalent ligands:
MPD 508(B)
MPD 510(B)
MPD 508(C)
MPD 508(D)
_CA
×19
