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PDBsum entry 5es4
Go to PDB code:
Ligand/metal interactions
PDB id
5es4
5 instances of ligand highlighted
NAG-NAG-BMA-MAN
Ligands
NAG-NAG-BMA-MAN-
MAN
×6
NAG 1(I) to MAN 5(I)
NAG 1(P) to MAN 5(P)
NAG 1(Q) to MAN 5(Q)
NAG 1(V) to MAN 5(V)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN-MAN-
MAN-MAN
NAG 1(J) to MAN 10(J)
NAG-NAG-BMA-MAN
×5
NAG 1(K) to MAN 4(K)
NAG 1(N) to MAN 4(N)
NAG 1(S) to MAN 4(S)
NAG 1(T) to MAN 4(T)
NAG 1(X) to MAN 4(X)
NAG-NAG-BMA
NAG 1(L) to BMA 3(L)
NAG-NAG
NAG 1(M) to NAG 2(M)
NAG-NAG-BMA-MAN-
MAN-MAN-MAN
×2
NAG 1(O) to MAN 7(O)
NAG-NAG-BMA-MAN-
MAN-MAN
NAG 1(R) to MAN 6(R)
NAG
×27
NAG 3031(A)
NAG 3042(A)
NAG 3678(A)
NAG 3920(A)
NAG 3232(B)
NAG 3620(B)
NAG 3031(C)
NAG 3042(C)
NAG 3678(C)
NAG 3920(C)
NAG 3094(F)
NAG 3190(F)
NAG 3094(H)
NAG 3190(H)
NAG 3232(H)
Metals
_CA
×16
CA 2002(D)
CA 2005(A)
CA 2006(A)
CA 2007(A)
CA 2005(C)
CA 2006(C)
CA 2007(C)
CA 2002(F)
CA 2002(H)
_MG
MG 2009(A)
Ligand
NAG-NAG-BMA-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(X)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(X)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(X)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(X)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN
List of
interactions
NAG 1(X) to MAN 4(X)
_CA
×16
_MG
