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PDBsum entry 6v0r
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Ligand/metal interactions PDB id
6v0r
6 instances of ligand highlighted
NAG-NAG-BMA
Ligands
NAG-NAG ×12
NAG 1(G) to NAG 2(G)
NAG 1(H) to NAG 2(H)
NAG 1(I) to NAG 2(I)
NAG 1(N) to NAG 2(N)
NAG-NAG-BMA-MAN-
MAN-MAN ×3
NAG 1(J) to MAN 6(J)
NAG-NAG-BMA ×6
NAG 1(K) to BMA 3(K)
NAG 1(L) to BMA 3(L)
NAG-NAG-FUC ×3
NAG 1(M) to FUC 3(M)
NAG-FUC ×3
NAG 1(O) to FUC 2(O)
NAG ×33
NAG 603(A)
NAG 606(A)
NAG 609(A)
NAG 610(A)
NAG 611(A)
NAG 618(A)
NAG 622(A)
NAG 623(A)
NAG 632(A)
NAG 703(B)
NAG 704(B)
  
Ligand NAG-NAG-BMA

NAG - 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine] Formula: C8H15NO6
BMA - Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose] Formula: C6H12O6
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
NAG 1(K) 15 15 1 1 Complete Chiral checks - OK
NAG 2(K) 15 15 1 0 Complete Chiral checks - OK
BMA 3(K) 12 12 1 0 Complete Chiral checks - OK
Additional Information
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LIGPLOT of interactions involving ligand NAG-NAG-BMA

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List of
interactions
 

NAG 1(K) to BMA 3(K)

also representing 2 other equivalent ligands:
NAG 1(T) to BMA 3(T)
NAG 1(c) to BMA 3(c)
  
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