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PDBsum entry 5ik5
Go to PDB code:
Ligand/metal interactions
PDB id
5ik5
Ligand highlighted
BDP-XYS-BDP-XYS
Ligands
A2G-GAL
A2G 1(B) to GAL 2(B)
NAG-NAG
NAG 1(C) to NAG 2(C)
BDP-XYS-BDP-XYS
BDP 1(D) to XYS 4(D)
GOL
×6
GOL 4007(A)
GOL 4008(A)
GOL 4009(A)
GOL 4010(A)
GOL 4011(A)
GOL 4012(A)
4MU
4MU 4013(A)
Metals
_CA
×2
CA 4001(A)
CA 4002(A)
Ligand
BDP-XYS-BDP-XYS
BDP
-
Beta-D-Glucopyranuronic acid [Beta-D-Glucuronic acid; d-Glucuronic acid; glucuronic acid]
Formula:
C
6
H
10
O
7
XYS
-
Alpha-D-Xylopyranose [Alpha-D-Xylose; d-Xylose; xylose; xylopyranose]
Formula:
C
5
H
10
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BDP 1(D)
13
13
1
0
Complete
Chiral checks - OK
XYS 2(D)
10
10
2
0
Complete
Chiral checks - OK
BDP 3(D)
13
13
1
0
Complete
Chiral checks - OK
XYS 4(D)
10
10
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
BDP 1(D)
-
0
XYS 2(D)
-
0
BDP 3(D)
O6B: O6A
|
O6A: O6B
2
XYS 4(D)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BDP-XYS-BDP-XYS
List of
interactions
BDP 1(D) to XYS 4(D)
_CA
×2
