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PDBsum entry 4zxb
Go to PDB code:
Ligand/metal interactions
PDB id
4zxb
Ligand highlighted
NAG-NAG-BMA-MAN-
NAG-FUC
Ligands
NAG-NAG-FUC
×3
NAG 1(F) to FUC 3(F)
NAG 1(H) to FUC 3(H)
NAG 1(K) to FUC 3(K)
NAG-NAG-BMA
NAG 1(G) to BMA 3(G)
NAG-NAG-BMA-MAN-
NAG-FUC
NAG 1(I) to FUC 6(I)
NAG-FUC
×2
NAG 1(J) to FUC 2(J)
NAG 1(L) to FUC 2(L)
NAG
×3
NAG 1001(E)
NAG 1008(E)
NAG 1020(E)
Ligand
NAG-NAG-BMA-MAN-NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(I)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(I)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(I)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(I)
12
12
1
0
Complete
Chiral checks - OK
NAG 5(I)
15
15
1
0
Complete
Chiral checks - OK
FUC 6(I)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-FUC
List of
interactions
NAG 1(I) to FUC 6(I)
