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PDBsum entry 4jor
Go to PDB code:
Ligand/metal interactions
PDB id
4jor
2 instances of ligand highlighted
GOL
Ligands
ARG-LEU-GLN-ARG-
ARG-ARG-GLU-THR-
GLN-VAL
ARG 1(C) to VAL 10(C)
ARG-GLU-THR-GLN-
VAL
ARG 6(D) to VAL 10(D)
GOL
×2
GOL 401(A)
GOL 402(A)
Ligand
GOL
-
Glycerol
[Glycerin; propane-1,2,3-Triol]
Formula:
C
3
H
83
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ARG 6(D)
12
12
1
1
Complete
Chiral checks - OK
GLU 7(D)
10
10
1
1
Complete
Chiral checks - OK
THR 8(D)
8
8
1
1
Complete
Chiral checks - OK
GLN 9(D)
10
10
1
1
Complete
Chiral checks - OK
VAL 10(D)
8
8
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ARG 6(D)
-
0
GLU 7(D)
O: OXT
1
THR 8(D)
-
0
GLN 9(D)
O: OXT
1
VAL 10(D)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
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Validator
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of interactions involving ligand GOL
List of
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GOL 401(A)
