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PDBsum entry 2pmd
Go to PDB code:
Ligand/metal interactions
PDB id
2pmd
6 instances of ligand highlighted
PPV
Ligands
GDP
×2
GDP 416(A)
GNP
GNP 417(A)
PPV
×6
PPV 418(A)
PPV 419(A)
PPV 420(A)
Ligand
PPV
-
Pyrophosphate
Formula:
H
4
O
72
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PPV 418(A)
9
9
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product phosphate with similarity 55.56%
LIGPLOT
of interactions involving ligand PPV
List of
interactions
PPV 418(A)
(also representing equivalent ligand PPV 417(B) )
