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PDBsum entry 1g0r
Go to PDB code:
Ligand/metal interactions
PDB id
1g0r
16 instances of ligand highlighted
THM
Ligands
G1P
×7
G1P 2500(A)
SO4
×23
SO4 2507(A)
SO4 2508(A)
SO4 2528(B)
SO4 2509(C)
SO4 2515(C)
SO4 2512(D)
SO4 2514(D)
SO4 2517(D)
SO4 2520(E)
SO4 2519(F)
SO4 2522(F)
SO4 2524(F)
SO4 2525(G)
SO4 2529(H)
THM
×16
THM 2530(A)
THM 2538(A)
Ligand
THM
-
Thymidine
[Deoxythymidine; 2'-Deoxythymidine]
Formula:
C
10
H
14
N
2
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
THM 2530(A)
17
17
0
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant dTTP with similarity 58.62%
LIGPLOT
of interactions involving ligand THM
List of
interactions
THM 2530(A)
also representing 7 other equivalent ligands:
THM 2531(B)
THM 2532(C)
THM 2533(D)
THM 2534(E)
THM 2535(F)
THM 2536(G)
THM 2537(H)
