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PDBsum entry 1flc
Go to PDB code:
Ligand/metal interactions
PDB id
1flc
Ligand highlighted
NAG-NDG-BMA
Ligands
NAG-NAG-BMA
×11
NAG 1(G) to BMA 3(G)
NAG 1(H) to BMA 3(H)
NAG 1(I) to BMA 3(I)
NAG 1(J) to BMA 3(J)
NAG 1(M) to BMA 3(M)
NAG-NDG-MAN
×3
NAG 1(K) to MAN 3(K)
NAG-NDG-BMA
NAG 1(N) to BMA 3(N)
Ligand
NAG-NDG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(N)
15
15
1
1
Complete
Chiral checks - OK
NDG 2(N)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(N)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NDG-BMA
List of
interactions
NAG 1(N) to BMA 3(N)
