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PDBsum entry 6rv6
Go to PDB code:
Ligand/metal interactions
PDB id
6rv6
Ligand highlighted
NAG-NAG-FUC
Ligands
FUC-BGC
×3
FUC 1(C) to BGC 2(C)
FUC 1(D) to BGC 2(D)
FUC 1(E) to BGC 2(E)
NAG-NAG-FUC
NAG 1(F) to FUC 3(F)
MAN
×12
MAN 203(A)
MAN 204(A)
MAN 207(A)
MAN 208(A)
MAN 209(A)
MAN 503(B)
MAN 504(B)
MAN 505(B)
MAN 509(B)
MAN 510(B)
MAN 511(B)
MAN 512(B)
Ligand
NAG-NAG-FUC
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
1
1
0
0
0
0
0
0
NAG 2(F)
15
15
1
0
0
0
0
0
0
0
FUC 3(F)
11
11
1
0
0
0
0
0
1
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-FUC
List of
interactions
NAG 1(F) to FUC 3(F)
