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PDBsum entry 6leh
Go to PDB code:
Ligand/metal interactions
PDB id
6leh
Ligand highlighted
NAG-NAG-MAN
Ligands
NAG-NAG-MAN-MAN-
MAN-MAN
NAG 1(B) to MAN 6(B)
NAG-NAG-MAN
NAG 1(C) to MAN 3(C)
SO4
SO4 915(A)
EDO
×17
EDO 918(A)
EDO 919(A)
EDO 920(A)
EDO 921(A)
EDO 922(A)
EDO 923(A)
EDO 924(A)
EDO 925(A)
EDO 926(A)
EDO 927(A)
EDO 928(A)
EDO 929(A)
EDO 930(A)
EDO 931(A)
EDO 932(A)
EDO 933(A)
EDO 934(A)
EAR
EAR 935(A)
Metals
_ZN
×2
ZN 910(A)
ZN 911(A)
_CA
CA 912(A)
_NA
NA 913(A)
__K
K 914(A)
_CL
×2
CL 916(A)
CL 917(A)
Ligand
NAG-NAG-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
MAN 3(C)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-MAN
List of
interactions
NAG 1(C) to MAN 3(C)
_ZN
×2
_CA
_NA
