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PDBsum entry 6h7z
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Ligand/metal interactions
PDB id
6h7z
Ligand highlighted
NAG-NAG-BMA
Ligands
NAG-NAG
×4
NAG 1(B) to NAG 2(B)
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG 1(E) to NAG 2(E)
NAG-NAG-BMA
NAG 1(F) to BMA 3(F)
NAG-NAG-BMA-MAN-
MAN
NAG 1(G) to MAN 5(G)
NAG
NAG 811(A)
PEG
×3
PEG 822(A)
PEG 830(A)
PEG 831(A)
EDO
×6
EDO 823(A)
EDO 824(A)
EDO 825(A)
EDO 826(A)
EDO 827(A)
EDO 828(A)
TRS
TRS 829(A)
FVW
FVW 832(A)
Metals
_ZN
×2
ZN 801(A)
ZN 802(A)
_CA
CA 803(A)
_CL
CL 804(A)
Ligand
NAG-NAG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(F)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(F)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA
List of
interactions
NAG 1(F) to BMA 3(F)
_ZN
×2
_CA
_CL
