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PDBsum entry 5o4e
Go to PDB code:
Ligand/metal interactions
PDB id
5o4e
Ligand highlighted
MAN-NAG
Ligands
NAG-NAG-BMA-MAN-
NAG-MAN-NAG-FUC
×2
NAG 1(G) to FUC 8(G)
NAG 1(H) to FUC 8(H)
MAN-NAG
MAN 1(I) to NAG 2(I)
NAG-NAG-BMA-MAN-
NAG-MAN
NAG 1(J) to MAN 6(J)
MPD
×10
MPD 509(A)
MPD 512(A)
MPD 503(C)
MPD 507(D)
MPD 508(D)
MPD 201(E)
MPD 202(E)
MRD
MRD 510(A)
CAC
×2
CAC 511(A)
CAC 203(E)
TRS
TRS 509(D)
Ligand
MAN-NAG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
MAN 1(I)
12
11
0
0
1
0
-
-
-
-
NAG 2(I)
15
15
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand MAN-NAG
List of
interactions
MAN 1(I) to NAG 2(I)
