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PDBsum entry 5hjo
Go to PDB code:
Ligand/metal interactions
PDB id
5hjo
2 instances of ligand highlighted
DGO-Z61
Ligands
NAG-NAG-BMA-MAN
×2
NAG 1(E) to MAN 4(E)
DGO-Z61
×2
DGO 1(G) to Z61 2(G)
ACT
×2
ACT 1005(A)
EDO
×2
EDO 1006(A)
FMT
×20
FMT 1007(A)
FMT 1008(A)
FMT 1009(A)
FMT 1010(A)
FMT 1011(A)
FMT 1012(A)
FMT 1013(A)
FMT 1014(A)
FMT 1015(A)
FMT 1016(A)
DGO
×2
DGO 201(B)
Metals
_CA
×4
CA 203(B)
CA 202(B)
Ligand
DGO-Z61
DGO
-
D-Glucal
Formula:
C
6
H
10
O
4
Z61
-
2-Deoxy-Alpha-D-Arabino-Hexopyranose [2-Deoxy-Alpha-D-Glucopyranose; 2-Deoxy-Alpha-D- Mannopyranose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
DGO 1(G)
10
10
0
0
Complete
Chiral checks - OK
Z61 2(G)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand DGO-Z61
List of
interactions
DGO 1(G) to Z61 2(G)
(also representing equivalent ligand DGO 1(H) to Z61 2(H) )
_CA
×4
