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PDBsum entry 5fob
Go to PDB code:
Ligand/metal interactions
PDB id
5fob
Ligand highlighted
NAG-NAG
Ligands
NAG-NAG-BMA-FUC
NAG 1(D) to FUC 4(D)
NAG-NAG
NAG 1(E) to NAG 2(E)
GOL
×24
GOL 1666(A)
GOL 1667(A)
GOL 1668(A)
GOL 1669(A)
GOL 1670(A)
GOL 1671(A)
GOL 1672(A)
GOL 1673(A)
GOL 1674(A)
GOL 1675(A)
GOL 2664(B)
GOL 2665(B)
GOL 2666(B)
GOL 2667(B)
GOL 2668(B)
GOL 2669(B)
GOL 2670(B)
GOL 2671(B)
GOL 2672(B)
GOL 2673(B)
GOL 2674(B)
GOL 2675(B)
GOL 1259(C)
GOL 1260(C)
Metals
IOD
×7
IOD 1679(A)
IOD 1677(A)
IOD 1678(A)
IOD 2678(B)
IOD 2679(B)
IOD 2680(B)
IOD 2681(B)
_CL
×5
CL 2682(B)
CL 1262(C)
CL 1665(A)
CL 2676(B)
CL 1261(C)
_NA
×2
NA 1676(A)
NA 2677(B)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(E)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(E)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(E) to NAG 2(E)
IOD
×7
_CL
×5
