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PDBsum entry 5d4e
Go to PDB code:
Ligand/metal interactions
PDB id
5d4e
2 instances of ligand highlighted
DPO
Ligands
C5P
×2
C5P 2005(D)
DPO
×2
DPO 2006(D)
COD
×2
COD 101(G)
Metals
_MG
×9
MG 2001(B)
MG 2007(D)
MG 2001(F)
MG 1601(L)
MG 2003(D)
MG 2004(D)
_ZN
×4
ZN 2001(D)
ZN 2002(D)
Ligand
DPO
-
Diphosphate
Formula:
O
7
P
2
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
DPO 2006(D)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
DPO 2006(D)
P2: P1
|
O7: O1
|
O6: O2
|
O5: O3
|
P1: P2...
8
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand corresponds to this enzyme's product diphosphate
LIGPLOT
of interactions involving ligand DPO
List of
interactions
DPO 2006(D)
(also representing equivalent ligand DPO 1605(N) )
_MG
×9
_ZN
×4
