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PDBsum entry 5c1b
Go to PDB code:
Ligand/metal interactions
PDB id
5c1b
12 instances of ligand highlighted
AGS
Ligands
ARG-ALA-PHE-SER-
GLY-SER-GLY-ASN-
ARG-LEU
ARG 226(U) to LEU 235(U)
AGS
×12
AGS 901(A)
AGS 902(A)
GOL
×2
GOL 906(F)
GOL 907(F)
Metals
_CL
×6
CL 905(A)
_MG
×12
MG 905(C)
MG 905(D)
MG 903(A)
MG 904(B)
MG 904(C)
MG 904(D)
MG 904(E)
MG 904(F)
Ligand
AGS
-
Phosphothiophosphoric acid-Adenylate ester
[Atp-Gamma-S; adenosine 5'-(3-
Thiotriphosphate); adenosine 5'-(Gamma-
Thiotriphosphate); adenosine-5'-
Diphosphate monothiophosphate]
Formula:
C
10
H
16
N
5
O
12
P
3
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
AGS 901(A)
31
31
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
AGS 901(A)
O2A: O1A
|
O1A: O2A
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's reactant ATP with similarity 93.75%
LIGPLOT
of interactions involving ligand AGS
List of
interactions
AGS 901(A)
also representing 5 other equivalent ligands:
AGS 901(B)
AGS 902(C)
AGS 902(D)
AGS 901(E)
AGS 901(F)
_CL
×6
