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PDBsum entry 4o4h
Go to PDB code:
Ligand/metal interactions
PDB id
4o4h
2 instances of ligand highlighted
GDP
Ligands
GTP
×2
GTP 501(A)
GDP
×2
GDP 501(B)
LLM
LLM 503(B)
GOL
×2
GOL 504(B)
GOL 503(D)
ACP
ACP 401(F)
Metals
_CA
×3
CA 503(A)
CA 506(B)
CA 505(B)
_MG
×5
MG 502(C)
MG 402(F)
MG 502(B)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 501(B)
28
28
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GDP 501(B)
O3B: O1B
|
O1B: O2B
|
O2A: O1A
|
O1A: O2A
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 501(B)
(also representing equivalent ligand GDP 501(D) )
_CA
×3
_MG
×5
