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PDBsum entry 4nmo
Go to PDB code:
Ligand/metal interactions
PDB id
4nmo
Ligand highlighted
ALA-ASN-SER-ARG-
TRP-PRO-THR-SER-
ALY-ILE
Ligands
ARG-TRP-PRO-THR-
SER-ALY-ILE
ARG 4(C) to ILE 10(C)
ALA-ASN-SER-ARG-
TRP-PRO-THR-SER-
ALY-ILE
ALA 1(D) to ILE 10(D)
GOL
×2
GOL 401(A)
GOL 401(B)
Ligand
ALA-ASN-SER-ARG-TRP-PRO-THR-SER-ALY-ILE
-
N(6)-Acetyllysine
Formula:
C
8
HNN
2
O
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(D)
6
-
-
-
Residue too small to validate
ASN 2(D)
9
9
1
1
Complete
Chiral checks - OK
SER 3(D)
7
7
1
1
Complete
Chiral checks - OK
ARG 4(D)
12
12
1
1
Complete
Chiral checks - OK
TRP 5(D)
15
15
1
1
Complete
Chiral checks - OK
PRO 6(D)
8
8
1
1
Complete
Chiral checks - OK
THR 7(D)
8
8
1
1
Complete
Chiral checks - OK
SER 8(D)
7
7
1
1
Complete
Chiral checks - OK
ALY 9(D)
13
13
1
1
Complete
Chiral checks - OK
ILE 10(D)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(D)
-
0
ASN 2(D)
-
0
SER 3(D)
O: OXT
1
ARG 4(D)
O: OXT
1
TRP 5(D)
-
0
PRO 6(D)
-
0
THR 7(D)
-
0
SER 8(D)
-
0
ALY 9(D)
-
0
ILE 10(D)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand ALA-ASN-SER-ARG-TRP-PRO-THR-SER-ALY-ILE
List of
interactions
ALA 1(D) to ILE 10(D)
