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PDBsum entry 4f4o
Go to PDB code:
Ligand/metal interactions
PDB id
4f4o
4 instances of ligand highlighted
NAG-FUC
Ligands
NAG-NAG
×3
NAG 1(M) to NAG 2(M)
NAG-FUC
×4
NAG 1(N) to FUC 2(N)
HEM-OXY
×8
HEM 201(A) to OXY 202(A)
HEM 201(B) to OXY 202(B)
NAG
×8
NAG 1003(C)
NAG 1004(C)
NAG 1001(L)
Ligand
NAG-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(N)
15
15
1
1
Complete
Chiral checks - OK
FUC 2(N)
11
11
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-FUC
List of
interactions
NAG 1(N) to FUC 2(N)
also representing 3 other equivalent ligands:
NAG 1(P) to FUC 2(P)
NAG 1(R) to FUC 2(R)
NAG 1(S) to FUC 2(S)
