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PDBsum entry 4esv
Go to PDB code:
Ligand/metal interactions
PDB id
4esv
10 instances of ligand highlighted
GDP
Ligands
MES
×4
MES 101(W)
MES 505(C)
MES 504(E)
MES 504(I)
GDP
×10
GDP 502(A)
ALF
×10
ALF 504(A)
Metals
_CA
×14
CA 507(A)
CA 501(B)
CA 504(D)
CA 502(F)
CA 503(L)
CA 501(A)
CA 505(A)
CA 506(A)
CA 502(C)
CA 502(D)
CA 502(E)
CA 502(I)
Ligand
GDP
-
Guanosine-5'-Diphosphate
Formula:
C
10
H
15
N
5
O
11
P
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GDP 502(A)
28
28
0
0
0
0
0
1
0
0
Advanced Analysis
Residue
Name Mismatches
Count
GDP 502(A)
O2B: O1B
|
O1B: O2B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product ADP with similarity 96.43%
LIGPLOT
of interactions involving ligand GDP
List of
interactions
GDP 502(A)
also representing 9 other equivalent ligands:
GDP 501(C)
GDP 501(D)
GDP 501(E)
GDP 501(F)
GDP 501(G)
GDP 501(I)
GDP 501(J)
GDP 501(K)
GDP 501(L)
_CA
×14
