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PDBsum entry 3w3n
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Ligand/metal interactions
PDB id
3w3n
2 instances of ligand highlighted
NAG-NAG-BMA
Ligands
NAG-NAG-BMA-MAN-
MAN
×4
NAG 1(C) to MAN 5(C)
NAG 1(E) to MAN 5(E)
NAG-NAG-BMA
×2
NAG 1(D) to BMA 3(D)
NAG
×13
NAG 1009(A)
NAG 1015(A)
NAG 1016(A)
NAG 1017(A)
NAG 1018(A)
NAG 1019(A)
NAG 920(B)
NAG 921(B)
RX8
×2
RX8 1020(A)
GOL
GOL 1021(A)
Ligand
NAG-NAG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(D)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(D)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(D)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA
List of
interactions
NAG 1(D) to BMA 3(D)
(also representing equivalent ligand NAG 1(G) to BMA 3(G) )
