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PDBsum entry 3olt
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Ligand/metal interactions
PDB id
3olt
2 instances of ligand highlighted
NAG-NAG-MAN
Ligands
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG-NAG-MAN
×2
NAG 1(D) to MAN 3(D)
EDO
×14
EDO 701(A)
EDO 702(A)
EDO 703(A)
EDO 704(A)
EDO 705(A)
EDO 706(A)
EDO 707(A)
EDO 706(B)
ACD
×2
ACD 708(A)
COH
×2
COH 709(A)
NAG
×2
NAG 710(A)
BOG
BOG 711(A)
Ligand
NAG-NAG-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(D)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(D)
15
15
1
0
Complete
Chiral checks - OK
MAN 3(D)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-MAN
List of
interactions
NAG 1(D) to MAN 3(D)
(also representing equivalent ligand NAG 1(F) to MAN 3(F) )
