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PDBsum entry 3b9f
Go to PDB code:
Ligand/metal interactions
PDB id
3b9f
Ligand highlighted
SGN-IDS
Ligands
NAG-FUC
NAG 1(A) to FUC 2(A)
SGN-IDS
SGN 1(B) to IDS 2(B)
SO4
×3
SO4 781(H)
SO4 388(I)
SO4 389(I)
GOL
×5
GOL 782(H)
GOL 3(H)
GOL 4(H)
GOL 390(I)
GOL 391(I)
Ligand
SGN-IDS
SGN
-
2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D-Glucopyranose [N,O6-Disulfo-Glucosamine; 6-O-Sulfo-N-Sulfo-Alpha-D- Glucosamine; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D- Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-D-Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Glucose]
Formula:
C
6
H
13
NO
11
S
2
IDS
-
2-O-Sulfo-Alpha-L-Idopyranuronic acid [O2-Sulfo-Glucuronic acid; 2-O-Sulfo-Alpha-L-Iduronic acid; 2-O-Sulfo-L-Iduronic acid; 2-O-Sulfo-Iduronic acid]
Formula:
C
6
H
10
O
10
S
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
SGN 1(B)
20
16
0
0
4
0
IDS 2(B)
17
16
1
0
1
0
Advanced Analysis
Residue
Name Mismatches
Count
SGN 1(B)
O3S: O1S
|
O2S: O3S
2
IDS 2(B)
O6B: O6A
|
O6A: O6B
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand SGN-IDS
List of
interactions
SGN 1(B) to IDS 2(B)
