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PDBsum entry 2q8c
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Ligand/metal interactions PDB id
2q8c
Ligand highlighted
THR-ALA-ARG-M3L-
SER-THR-GLY-GLY
Ligands
ALA-ARG-M3L-SER
ALA 7(F) to SER 10(F)
THR-ALA-ARG-M3L-
SER-THR-GLY-GLY
THR 6(G) to GLY 13(G)
AKG ×2
AKG 503(A)
Metals
_NI ×2
NI 501(A)
_ZN ×2
ZN 505(A)
  
Ligand THR-ALA-ARG-M3L-SER-THR-GLY-GLY - N-Trimethyllysine
Formula: C9H21N2O2
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
THR 6(G) 8 8 1 1 0 0 0 0 0 0
ALA 7(G) 6 - - - - - - - - -
ARG 8(G) 12 12 1 1 0 0 0 0 0 0
M3L 9(G) 13 13 1 1 0 0 0 0 0 0
SER 10(G) 7 7 1 1 0 0 0 0 0 0
THR 11(G) 8 5 1 1 3 0 - - - -
GLY 12(G) 5 - - - - - - - - -
GLY 13(G) 5 - - - - - - - - -
Advanced Analysis
Residue Name Mismatches Count
THR 6(G) O: OXT 1
ALA 7(G) - 0
ARG 8(G) - 0
M3L 9(G) O: OXT 1
SER 10(G) - 0
THR 11(G) - 0
GLY 12(G) - 0
GLY 13(G) - 0
Additional Information
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Ligand matches this enzyme's product CO2 with similarity 40.00%


LIGPLOT of interactions involving ligand THR-ALA-ARG-M3L-SER-THR-GLY-GLY

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List of
interactions
 

THR 6(G) to GLY 13(G)
  
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