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PDBsum entry 2g5b
Go to PDB code:
Ligand/metal interactions
PDB id
2g5b
2 instances of ligand highlighted
NAG-NAG-BMA
Ligands
PRO-THR-SER-SER-
GLU-GLN-ILE
×4
PRO 601(I) to ILE 607(I)
NAG-NAG-BMA
×2
NAG 1(M) to BMA 3(M)
NAG-NDG
NAG 1(N) to NDG 2(N)
NAG-NAG-MAN
NAG 1(P) to MAN 3(P)
SO4
×7
SO4 702(A)
SO4 704(A)
SO4 703(C)
Ligand
NAG-NAG-BMA
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(M)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(M)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(M)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA
List of
interactions
NAG 1(M) to BMA 3(M)
(also representing equivalent ligand NAG 1(O) to BMA 3(O) )
