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PDBsum entry 1qho
Go to PDB code:
Ligand/metal interactions
PDB id
1qho
Ligand highlighted
BGC-GLC-AGL-GLC-
GLC-GLC
Ligands
GLC-GLC
×2
GLC 1(B) to GLC 2(B)
GLC 1(C) to GLC 2(C)
BGC-GLC-AGL-GLC-
GLC-GLC
BGC 1(D) to GLC 6(D)
SO4
SO4 704(A)
Metals
_CA
×3
CA 701(A)
CA 702(A)
CA 703(A)
Ligand
BGC-GLC-AGL-GLC-GLC-GLC
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
BGC
-
Beta-D-Glucopyranose [Beta-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
AGL
-
4-Amino-4,6-Dideoxy-Alpha-D-Glucopyranose [4,6-Dideoxy-4-Amino-Alpha-D-Glucose; 4-Amino-4-Deoxy- Alpha-D-Quinovopyranose; 4-Amino-4,6-Dideoxy-Alpha-D- Glucose; 4-Amino-4,6-Dideoxy-D-Glucose; 4-Amino-4,6- Dideoxy-Glucose]
Formula:
C
6
H
13
NO
4
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
BGC 1(D)
12
12
0
0
Complete
Chiral checks - OK
GLC 2(D)
12
12
1
0
Complete
Chiral checks - OK
AGL 3(D)
11
11
1
0
Complete
Chiral checks - OK
GLC 4(D)
12
12
1
1
Complete
Chiral checks - OK
GLC 5(D)
12
12
1
0
Complete
Chiral checks - OK
GLC 6(D)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand BGC-GLC-AGL-GLC-GLC-GLC
List of
interactions
BGC 1(D) to GLC 6(D)
_CA
×3
