Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: inc/head.html
PDBsum entry 1ppf
Go to PDB code:
Ligand/metal interactions
PDB id
1ppf
Ligand highlighted
NAG-NAG-BMA-MAN-
NAG-GLC-MAN-FUC
Ligands
NAG-NAG-BMA-MAN-
NAG-GAL-MAN-FUC
NAG 1(A) to FUC 8(A)
NAG-NAG-BMA-MAN-
NAG-GLC-MAN-FUC
NAG 1(B) to FUC 8(B)
Ligand
NAG-NAG-BMA-MAN-NAG-GLC-MAN-FUC
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
FUC
-
Alpha-L-Fucopyranose [Alpha-L-Fucose; 6-Deoxy-Alpha-L-Galactopyranose; l- Fucose; fucose]
Formula:
C
6
H
12
O
5
GLC
-
Alpha-D-Glucopyranose [Alpha-D-Glucose; d-Glucose; glucose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
1
0
0
0
0
0
0
NAG 2(B)
15
15
1
0
0
0
0
0
0
0
BMA 3(B)
12
12
1
0
0
0
0
0
0
0
MAN 4(B)
12
12
1
0
0
0
0
0
0
0
NAG 5(B)
15
15
1
0
0
0
0
0
2
0
GLC 6(B)
12
12
1
0
0
0
0
0
1
0
MAN 7(B)
12
12
1
0
0
0
0
0
0
0
FUC 8(B)
11
11
1
0
0
0
0
0
0
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
Use mouse to move/zoom
3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-NAG-GLC-MAN-FUC
List of
interactions
NAG 1(B) to FUC 8(B)
