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PDBsum entry 1m1x
Go to PDB code:
Ligand/metal interactions
PDB id
1m1x
3 instances of ligand highlighted
NAG-NDG
Ligands
NAG-NAG
×4
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG 1(E) to NAG 2(E)
NAG 1(G) to NAG 2(G)
NAG-NDG
×3
NAG 1(F) to NDG 2(F)
NAG 1(H) to NDG 2(H)
NAG 1(I) to NDG 2(I)
NAG
×4
NAG 2260(A)
NAG 2458(A)
NAG 3320(B)
NAG 3371(B)
Metals
_MN
×6
MN 4008(A)
MN 4002(B)
MN 4004(A)
MN 4005(A)
MN 4006(A)
MN 4007(A)
Ligand
NAG-NDG
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
NDG
-
2-Acetamido-2-Deoxy-Alpha-D-Glucopyranose [N-Acetyl-Alpha-D-Glucosamine; 2-Acetamido-2-Deoxy- Alpha-D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2- Acetamido-2-Deoxy-Glucose; 2-(Acetylamino)-2-Deoxy-A- D-Glucopyranose]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
1
1
Complete
Chiral checks - OK
NDG 2(F)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NDG
List of
interactions
NAG 1(F) to NDG 2(F)
_MN
×6
