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PDBsum entry 5d13
Go to PDB code:
Ligand/metal interactions
PDB id
5d13
4 instances of ligand highlighted
56J-LYS-LYS-GLU-
THR-GLU-VAL
Ligands
56J-LYS-LYS-GLU-
THR-GLU-VAL
×4
56J 419(G) to VAL 425(G)
56J 419(H) to VAL 425(H)
56J 419(F) to VAL 425(F)
56J-LYS
56J 501(I) to LYS 502(I)
Ligand
56J-LYS-LYS-GLU-THR-GLU-VAL
-
3-(9h-Fluoren-9-Yl)propanal
Formula:
C
16
H
14
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
56J 419(F)
17
17
0
0
0
0
0
0
0
0
LYS 420(F)
10
6
1
1
4
0
-
-
-
-
LYS 421(F)
10
6
1
1
4
0
-
-
-
-
GLU 422(F)
10
10
1
1
0
0
0
0
0
0
THR 423(F)
8
8
1
1
0
0
0
0
0
0
GLU 424(F)
10
6
1
1
4
0
-
-
-
-
VAL 425(F)
8
8
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
56J 419(F)
-
0
LYS 420(F)
O: OXT
1
LYS 421(F)
-
0
GLU 422(F)
-
0
THR 423(F)
-
0
GLU 424(F)
-
0
VAL 425(F)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand 56J-LYS-LYS-GLU-THR-GLU-VAL
List of
interactions
56J 419(F) to VAL 425(F)
