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PDBsum entry 4x9f
Go to PDB code:
Ligand/metal interactions
PDB id
4x9f
2 instances of ligand highlighted
NAG-NAG-BMA-MAN-
MAN
Ligands
NAG-NAG-BMA-MAN-
MAN
×2
NAG 1(C) to MAN 5(C)
NAG 1(F) to MAN 5(F)
NAG-NAG-BMA
×2
NAG 1(D) to BMA 3(D)
NAG 1(E) to BMA 3(E)
GOL
×4
GOL 409(A)
GOL 410(A)
GOL 419(A)
SO4
×15
SO4 411(A)
SO4 412(A)
SO4 413(A)
SO4 414(A)
SO4 415(A)
SO4 416(A)
SO4 410(B)
SO4 411(B)
SO4 412(B)
SO4 413(B)
SO4 414(B)
SO4 415(B)
SO4 416(B)
SO4 417(B)
SO4 418(B)
EPE
×2
EPE 417(A)
EPE 418(A)
Ligand
NAG-NAG-BMA-MAN-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(F)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(F)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(F)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(F)
12
12
1
0
Complete
Chiral checks - OK
MAN 5(F)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-MAN
List of
interactions
NAG 1(F) to MAN 5(F)
