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PDBsum entry 7b8h
Go to PDB code:
Ligand/metal interactions
PDB id
7b8h
Ligand highlighted
IDS-SGN-IDS-SGN-
IDS
Ligands
IDS-SGN-IDS-SGN-
IDS
IDS 1(B) to IDS 5(B)
GOL
GOL 401(A)
NIO
NIO 402(A)
Ligand
IDS-SGN-IDS-SGN-IDS
IDS
-
2-O-Sulfo-Alpha-L-Idopyranuronic acid [O2-Sulfo-Glucuronic acid; 2-O-Sulfo-Alpha-L-Iduronic acid; 2-O-Sulfo-L-Iduronic acid; 2-O-Sulfo-Iduronic acid]
Formula:
C
6
HOO
10
S
SGN
-
2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D-Glucopyranose [N,O6-Disulfo-Glucosamine; 6-O-Sulfo-N-Sulfo-Alpha-D- Glucosamine; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Alpha-D- Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-D-Glucose; 2-Deoxy-6-O-Sulfo-2-(Sulfoamino)-Glucose]
Formula:
C
6
H
13
NO
11
S
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
IDS 1(B)
17
17
0
0
Complete
Chiral checks - OK
SGN 2(B)
20
20
1
0
Complete
Chiral checks - OK
IDS 3(B)
17
17
1
0
Complete
Chiral checks - OK
SGN 4(B)
20
20
1
0
Complete
Chiral checks - OK
IDS 5(B)
17
17
1
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
IDS 1(B)
O3S: O1S
|
O1S: O3S
2
SGN 2(B)
O3S: O2S
|
O1S: O3S
|
O6S: O4S
|
O4S: O6S
4
IDS 3(B)
O6B: O6A
|
O6A: O6B
2
SGN 4(B)
O6S: O5S
|
O4S: O6S
2
IDS 5(B)
O3S: O1S
|
O1S: O3S
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand IDS-SGN-IDS-SGN-IDS
List of
interactions
IDS 1(B) to IDS 5(B)
