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PDBsum entry 6v2s
Go to PDB code:
Ligand/metal interactions
PDB id
6v2s
2 instances of ligand highlighted
5R0-PHE-ALA-LEU-
ELY-5R5
Ligands
5R0-PHE-ALA-LEU-
ELY-5R5
×2
5R0 1(C) to 5R5 6(C)
UNX
×19
UNX 201(A)
UNX 202(A)
UNX 203(A)
UNX 204(A)
UNX 206(A)
UNX 207(A)
UNX 201(B)
UNX 202(B)
UNX 203(B)
UNX 207(B)
UNX 209(B)
UNX 101(D)
Ligand
5R0-PHE-ALA-LEU-ELY-5R5
5R0
-
4-~{Tert}-Butylbenzoic acid
Formula:
C
11
H
14
O
2
ELY
-
N~6~,N~6~-Diethyl-L-Lysine [(2s)-2-Azanyl-6-(Diethylamino)hexanoic acid]
Formula:
C
10
H
22
N
2
O
2
5R5
-
Methyl l-Serinate [Methyl (2~{s})-2-Azanyl-3-Oxidanyl-Propanoate]
Formula:
C
4
H
9
NO
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
5R0 1(C)
13
13
1
1
0
0
0
0
0
0
PHE 2(C)
12
12
1
1
0
0
0
0
0
0
ALA 3(C)
6
-
-
-
-
-
-
-
-
-
LEU 4(C)
9
9
1
1
0
0
0
0
0
0
ELY 5(C)
14
13
1
1
1
0
-
-
-
-
5R5 6(C)
8
7
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
5R0 1(C)
C06: C10
|
C10: C06
|
C09: C07
|
C07: C09
4
PHE 2(C)
O: OXT
1
ALA 3(C)
-
0
LEU 4(C)
O: OXT
1
ELY 5(C)
O: OXT
1
5R5 6(C)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand 5R0-PHE-ALA-LEU-ELY-5R5
List of
interactions
5R0 1(C) to 5R5 6(C)
(also representing equivalent ligand 5R0 1(D) to 5R5 6(D) )
