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PDBsum entry 6ubh
Go to PDB code:
Ligand/metal interactions
PDB id
6ubh
4 instances of ligand highlighted
PHE-ASP-PHE-TRP-
VAL
Ligands
PHE-ASP-PHE-TRP-
VAL
×4
PHE -2(E) to VAL 2(E)
Metals
_NA
×3
NA 201(A)
NA 201(C)
NA 201(D)
Ligand
PHE-ASP-PHE-TRP-VAL
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
PHE -2(E)
12
6
1
1
6
1
-
-
-
-
ASP -1(E)
9
9
1
1
0
0
0
0
0
0
PHE 0(E)
12
12
1
1
0
0
0
0
0
0
TRP 1(E)
15
15
1
1
0
0
0
0
0
0
VAL 2(E)
8
8
0
0
0
0
0
0
0
0
Advanced Analysis
Residue
Name Mismatches
Count
PHE -2(E)
-
0
ASP -1(E)
OD2: OD1
|
OD1: OD2
|
O: OXT
3
PHE 0(E)
O: OXT
1
TRP 1(E)
O: OXT
1
VAL 2(E)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
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Validator
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3D Viewers:
LIGPLOT
of interactions involving ligand PHE-ASP-PHE-TRP-VAL
List of
interactions
PHE -2(E) to VAL 2(E)
also representing 3 other equivalent ligands:
PHE -2(F) to VAL 2(F)
PHE -2(G) to VAL 2(G)
PHE -2(H) to VAL 2(H)
_NA
×3
