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PDBsum entry 6fig
Go to PDB code:
Ligand/metal interactions
PDB id
6fig
4 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG
×4
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG-NAG-FUC
NAG 1(E) to FUC 3(E)
EDO
EDO 510(A)
NAG
NAG 507(B)
CIT
CIT 508(B)
Metals
_CA
×4
CA 501(A)
CA 502(A)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product ADP with similarity 41.38%
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(C) to NAG 2(C)
(also representing equivalent ligand NAG 1(F) to NAG 2(F) )
_CA
×4
