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PDBsum entry 6d5h
Go to PDB code:
Ligand/metal interactions
PDB id
6d5h
Ligand highlighted
GNP
Ligands
GNP
GNP 201(A)
FV7
FV7 2001(B)
FMT
×5
FMT 2002(B)
FMT 2003(B)
FMT 2004(B)
FMT 2005(B)
FMT 2006(B)
GOL
×2
GOL 2007(B)
GOL 2008(B)
Metals
_CL
×3
CL 203(A)
CL 202(C)
CL 201(C)
_MG
MG 202(A)
Ligand
GNP
-
Phosphoaminophosphonic acid-Guanylate ester
Formula:
C
10
H
17
N
6
O
13
P
3
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
GNP 201(A)
32
32
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
GNP 201(A)
O2G: O1G
|
O1G: O2G
|
O2B: O1B
|
O1B: O2B
4
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product GDP with similarity 81.82%
LIGPLOT
of interactions involving ligand GNP
List of
interactions
GNP 201(A)
_CL
×3
