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PDBsum entry 5iee
Go to PDB code:
Ligand/metal interactions
PDB id
5iee
Ligand highlighted
NAG-NAG
Ligands
NAG-NAG
NAG 1(C) to NAG 2(C)
PG4
×3
PG4 1003(A)
PG4 1004(A)
PG4 1005(A)
P6G
×4
P6G 1006(A)
P6G 1007(A)
P6G 1008(A)
P6G 1024(A)
EDO
×6
EDO 1009(A)
EDO 1010(A)
EDO 1011(A)
EDO 1012(A)
EDO 1013(A)
EDO 203(B)
FMT
×10
FMT 1014(A)
FMT 1015(A)
FMT 1016(A)
FMT 1017(A)
FMT 1018(A)
FMT 1019(A)
FMT 1020(A)
FMT 1021(A)
FMT 1022(A)
FMT 204(B)
NOJ
NOJ 1023(A)
Metals
_CA
×2
CA 201(B)
CA 202(B)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(C)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(C)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product beta-D-glucose with similarity 62.50%
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(C) to NAG 2(C)
_CA
×2
