PDBsum entry 5hjo

Ligand/metal interactions

PDB id

5hjo


	2 instances of ligand highlighted
	NAG-NAG-BMA-MAN

Ligands

NAG-NAG-BMA-MAN ×2

NAG 1(E) to MAN 4(E)

DGO-Z61 ×2

ACT ×2

EDO ×2

FMT ×20

DGO ×2

Metals

_CA ×4

CA 203(B)

CA 202(B)

Ligand NAG-NAG-BMA-MAN

NAG - 2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine] Formula: C₈H₁₅NO₆

BMA - Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose] Formula: C₆H₁₂O₆

MAN - Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose] Formula: C₆H₁₂O₆

Validation of ligand annotation

Per Residue Validation

	Atoms				Missing		Incorrect Chiral Centres
Residue	Dic.	Struc.	Link	Subs.	Atoms	Rings	Planar	High	C	Other
NAG 1(E)	15	15	1	1	Complete		Chiral checks - OK
NAG 2(E)	15	15	1	0	Complete		Chiral checks - OK
BMA 3(E)	12	12	1	0	Complete		Chiral checks - OK
MAN 4(E)	12	12	1	0	Complete		Chiral checks - OK

Additional Information

Validation carried out using MotiveValidator. Full validation report can be found in Validator^DB.

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Het Group BMA matches this enzyme's product beta-D-glucose with similarity 91.67%

LIGPLOT of interactions involving ligand NAG-NAG-BMA-MAN

List of
interactions

NAG 1(E) to MAN 4(E)

(also representing equivalent ligand NAG 1(F) to MAN 4(F) )