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PDBsum entry 5eel
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Ligand/metal interactions PDB id
5eel
5 instances of ligand highlighted
SER-PHE-GLU-GLY-
TYR-ASP-ASN-73C-
AEA
Ligands
SER-PHE-GLU-GLY-
TYR-ASP-ASN-73C-
AEA ×5
SER 1(L) to AEA 9(L)
SER 1(N) to AEA 9(N)
SER 1(Q) to AEA 9(Q)
SER 1(R) to AEA 9(R)
SER-PHE-GLU-GLY-
TYR-ASP-ASN-73C
SER 1(P) to 73C 8(P)
MLA ×5
MLA 601(A)
FMT ×6
FMT 602(A)
Metals
_NA ×6
NA 603(A)
  
Ligand SER-PHE-GLU-GLY-TYR-ASP-ASN-73C-AEA

73C - (2~{s})-2-Azanyl-3-Butoxy-Propanoic acid Formula: C7H15NO3
AEA - (2-Amino-2-Carbamoyl-Ethylsulfanyl)-Acetic acid Formula: C5H10N2O3S
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
SER 1(L) 7 7 1 1 Complete Chiral checks - OK
PHE 2(L) 12 12 1 1 Complete Chiral checks - OK
GLU 3(L) 10 10 1 1 Complete Chiral checks - OK
GLY 4(L) 5 - - - Residue too small to validate
TYR 5(L) 13 13 1 1 Complete Chiral checks - OK
ASP 6(L) 9 9 1 1 Complete Chiral checks - OK
ASN 7(L) 9 9 1 1 Complete Chiral checks - OK
73C 8(L) 11 11 1 1 Complete Chiral checks - OK
AEA 9(L) 11 11 1 1 Complete Chiral checks - OK
Advanced Analysis
Residue Name Mismatches Count
SER 1(L) O: OXT 1
PHE 2(L) O: OXT 1
GLU 3(L) - 0
GLY 4(L) - 0
TYR 5(L) O: OXT 1
ASP 6(L) - 0
ASN 7(L) O: OXT 1
73C 8(L) - 0
AEA 9(L) O1: O2 1
Additional Information
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LIGPLOT of interactions involving ligand SER-PHE-GLU-GLY-TYR-ASP-ASN-73C-AEA

JSmol




List of
interactions
 

SER 1(L) to AEA 9(L)

(also representing equivalent ligand SER 1(M) to AEA 9(M) )
  
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