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PDBsum entry 5c11
Go to PDB code:
Ligand/metal interactions
PDB id
5c11
Ligand highlighted
ALA-ARG-THR-4WQ-
GLN-THR-ALA
Ligands
ALA-ARG-THR-4WQ-
GLN-THR-ALA
ALA 1(B) to ALA 7(B)
Metals
_ZN
×2
ZN 102(A)
ZN 101(A)
Ligand
ALA-ARG-THR-4WQ-GLN-THR-ALA
-
(2s)-2-Amino-7,7-Dimethyloctanoic acid
Formula:
C
10
H
21
NO
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
ALA 1(B)
6
-
-
-
Residue too small to validate
ARG 2(B)
12
12
1
1
Complete
Chiral checks - OK
THR 3(B)
8
8
1
1
Complete
Chiral checks - OK
4WQ 4(B)
13
13
1
1
Complete
Chiral checks - OK
GLN 5(B)
10
10
1
1
Complete
Chiral checks - OK
THR 6(B)
8
8
1
1
Complete
Chiral checks - OK
ALA 7(B)
6
-
-
-
Residue too small to validate
Advanced Analysis
Residue
Name Mismatches
Count
ALA 1(B)
-
0
ARG 2(B)
-
0
THR 3(B)
-
0
4WQ 4(B)
-
0
GLN 5(B)
O: OXT
1
THR 6(B)
-
0
ALA 7(B)
-
0
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
Ligand matches this enzyme's product succinate with similarity 50.00%
LIGPLOT
of interactions involving ligand ALA-ARG-THR-4WQ-GLN-THR-ALA
List of
interactions
ALA 1(B) to ALA 7(B)
_ZN
×2
