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PDBsum entry 5bmm
Go to PDB code:
Ligand/metal interactions
PDB id
5bmm
2 instances of ligand highlighted
FUM-ALC-PFF-PPN-
ORN
Ligands
FUM-ALC-PFF-PPN-
ORN
×2
FUM 1(C) to ORN 5(C)
Ligand
FUM-ALC-PFF-PPN-ORN
FUM
-
Fumaric acid
Formula:
C
4
H
44
O
4
ALC
-
2-Amino-3-Cyclohexyl-Propionic acid
Formula:
C
9
H
17
NO
2
PFF
-
4-Fluoro-L-Phenylalanine
Formula:
C
9
H
10
FNO
2
PPN
-
Para-Nitrophenylalanine
Formula:
C
9
HNN
2
O
4
ORN
-
L-Ornithine
Formula:
C
5
HNN
2
O
2
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
FUM 1(C)
8
8
2
2
Complete
Chiral checks - OK
ALC 2(C)
12
12
1
1
Complete
Chiral checks - OK
PFF 3(C)
13
13
1
1
Complete
Chiral checks - OK
PPN 4(C)
15
15
1
1
Complete
Chiral checks - OK
ORN 5(C)
9
9
0
0
Complete
Chiral checks - OK
Advanced Analysis
Residue
Name Mismatches
Count
FUM 1(C)
-
0
ALC 2(C)
O: OXT
1
PFF 3(C)
-
0
PPN 4(C)
-
0
ORN 5(C)
OXT: O
|
O: OXT
2
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand FUM-ALC-PFF-PPN-ORN
List of
interactions
FUM 1(C) to ORN 5(C)
(also representing equivalent ligand FUM 1(D) to ORN 5(D) )
