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PDBsum entry 5b38
Go to PDB code:
Ligand/metal interactions
PDB id
5b38
Ligand highlighted
LEU-SER-SER-PRO-
VAL-THR-LYS-SER-
PHE
Ligands
LEU-SER-SER-PRO-
VAL-THR-LYS-SER-
PHE
LEU 1(C) to PHE 9(C)
NAG
×3
NAG 301(G)
NAG 302(G)
NAG 303(G)
Ligand
LEU-SER-SER-PRO-VAL-THR-LYS-SER-PHE
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
LEU 1(C)
9
9
1
1
0
0
0
0
0
0
SER 2(C)
7
6
0
0
1
0
-
-
-
-
SER 3(C)
7
6
0
0
1
0
-
-
-
-
PRO 4(C)
8
8
1
1
0
0
0
0
0
0
VAL 5(C)
8
8
1
1
0
0
0
0
0
0
THR 6(C)
8
8
1
1
0
0
0
0
0
0
LYS 7(C)
10
10
1
1
0
0
0
0
0
0
SER 8(C)
7
6
0
0
1
0
-
-
-
-
PHE 9(C)
12
11
0
0
1
0
-
-
-
-
Advanced Analysis
Residue
Name Mismatches
Count
LEU 1(C)
O: OXT
1
SER 2(C)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
SER 3(C)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
PRO 4(C)
-
0
VAL 5(C)
-
0
THR 6(C)
-
0
LYS 7(C)
-
0
SER 8(C)
CB: C
|
C: CB
|
O: OG
|
OG: OXT
4
PHE 9(C)
O: OXT
1
Additional Information
Validation carried out using
MotiveValidator
. Nothing to show in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand LEU-SER-SER-PRO-VAL-THR-LYS-SER-PHE
List of
interactions
LEU 1(C) to PHE 9(C)
