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PDBsum entry 4zmj
Go to PDB code:
Ligand/metal interactions
PDB id
4zmj
Ligand highlighted
NAG-NAG-BMA-MAN-
MAN-MAN
Ligands
NAG-NAG-BMA-MAN-
MAN-MAN
NAG 1(A) to MAN 6(A)
NAG-NAG
×2
NAG 1(C) to NAG 2(C)
NAG 1(D) to NAG 2(D)
NAG
×15
NAG 601(G)
NAG 608(G)
NAG 609(G)
NAG 610(G)
NAG 611(G)
NAG 612(G)
NAG 613(G)
NAG 614(G)
NAG 615(G)
NAG 616(G)
NAG 619(G)
NAG 620(G)
NAG 701(B)
NAG 702(B)
NAG 703(B)
Ligand
NAG-NAG-BMA-MAN-MAN-MAN
NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose [N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
BMA
-
Beta-D-Mannopyranose [Beta-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
MAN
-
Alpha-D-Mannopyranose [Alpha-D-Mannose; d-Mannose; mannose]
Formula:
C
6
H
12
O
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(A)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(A)
15
15
1
0
Complete
Chiral checks - OK
BMA 3(A)
12
12
1
0
Complete
Chiral checks - OK
MAN 4(A)
12
12
1
0
Complete
Chiral checks - OK
MAN 5(A)
12
12
1
0
Complete
Chiral checks - OK
MAN 6(A)
12
12
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG-BMA-MAN-MAN-MAN
List of
interactions
NAG 1(A) to MAN 6(A)
