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PDBsum entry 4oi9
Go to PDB code:
Ligand/metal interactions
PDB id
4oi9
3 instances of ligand highlighted
NAG-NAG
Ligands
NAG-NAG
×3
NAG 1(B) to NAG 2(B)
NAG 1(C) to NAG 2(C)
NAG 1(E) to NAG 2(E)
NAG-NAG-BMA-MAN
NAG 1(D) to MAN 4(D)
NAG
×5
NAG 2303(A)
NAG 2304(A)
NAG 2305(A)
NAG 2312(A)
NAG 2315(A)
EDO
×31
EDO 2316(A)
EDO 2317(A)
EDO 2318(A)
EDO 2319(A)
EDO 2320(A)
EDO 2321(A)
EDO 2322(A)
EDO 2323(A)
EDO 2324(A)
EDO 2325(A)
EDO 2326(A)
EDO 2327(A)
EDO 2328(A)
EDO 2329(A)
EDO 2330(A)
EDO 2331(A)
EDO 2332(A)
EDO 2333(A)
EDO 2334(A)
EDO 2335(A)
EDO 2336(A)
EDO 2337(A)
EDO 2338(A)
EDO 2339(A)
EDO 2340(A)
EDO 2341(A)
EDO 2342(A)
EDO 2343(A)
EDO 2344(A)
EDO 2345(A)
EDO 2346(A)
Ligand
NAG-NAG
-
2-Acetamido-2-Deoxy-Beta-D-Glucopyranose
[N-Acetyl-Beta-D-Glucosamine; 2-Acetamido-2-Deoxy-Beta- D-
Glucose; 2-Acetamido-2-Deoxy-D-Glucose; 2-Acetamido- 2-
Deoxy-Glucose; n-Acetyl-D-Glucosamine]
Formula:
C
8
H
15
NO
6
Validation of ligand annotation
Per Residue Validation
Atoms
Missing
Incorrect Chiral Centres
Residue
Dic.
Struc.
Link
Subs.
Atoms
Rings
Planar
High
C
Other
NAG 1(B)
15
15
1
1
Complete
Chiral checks - OK
NAG 2(B)
15
15
1
0
Complete
Chiral checks - OK
Additional Information
Validation carried out using
MotiveValidator
. Full validation report can be found in
Validator
DB
.
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3D Viewers:
LIGPLOT
of interactions involving ligand NAG-NAG
List of
interactions
NAG 1(B) to NAG 2(B)
